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Mariana Neves

Publications:

2024

  • Neves M, Schadock I, Butzke D, Schönfelder G, Bert B. Reusing the EURL ECVAM reports for detecting the research goal in biomedical abstracts, 2024 (submitted)
  • Butzke D, Bert B, Gulich K, Schönfelder G, Neves M. SMAFIRA: a literature-based web tool to assist researchers with retrieval of 3R-relevant information, Laboratory Animals, 2024 (accepted)
  • Neves M. Detection of fields of applications in biomedical abstracts with the support of argumentation elements, Preprint in arXiv, 2024, [Paper]

    • 2023

  • Neves M, Jimeno Yepes A, Névéol A, Bawden R, Di Nunzio GM, Roller R, Thomas P, Vezzani F, Vicente Navarro M, Yeganova L, Wiemann D, Grozea C. Findings of the WMT 2023 Biomedical Translation Shared Task: Evaluation of ChatGPT 3.5 as a Comparison System, 8th Conference on Machine Translation, EMNLP 2023. [PDF and Bibtex]
  • Neves M, Klippert A, Knöspel F, Rudeck J, Stolz A, Ban Z, Becker M, Diederich K, Grune B, Kahnau P, Ohnesorge N, Pucher J, Schönfelder G, Bert B, Butzke D. Automatic classification of experimental models in biomedical literature to support searching for alternative methods to animal experiments. Journal of Biomedical Semantics, 14, no. 13. [Paper]
  • Neves M, Schadock I, Eusemann B, Schönfelder G, Bert B, Butzke D. Is the ranking of PubMed similar articles good enough? An evaluation of text similarity methods for three datasets . BioNLP Workshop, ACL'23, Toronto, Canada. [PDF and Bibtex]
  • Neves M. Bf3R at SemEval-2023 Task 7: a text similarity model for textual entailment and evidence retrieval in clinical trials and animal studies. SemEval Workshop, ACL'23, Toronto, Canada. [PDF and Bibtex]

    • 2022

  • Neves M, Jimeno Yepes A, Siu A, Roller R, Thomas P, Vicente Navarro M, Yeganova L, Wiemann D, Di Nunzio GM, Vezzani F, Gerardin C, Bawden R, Johan Estrada D, Lima-lopez S, Farre-maduel E, Krallinger M, Grozea C, Neveol A. Findings of the WMT 2022 Biomedical Translation Shared Task: Monolingual Clinical Case Reports, 7th Conference on Machine Translation, EMNLP 2022. [PDF and Bibtex]

    • 2021

  • Yeganova L, Wiemann D, Neves M, Vezzani F, Siu A, Jauregi Unanue I, Oronoz M, Mah N, Névéol A, Martinez D, Bawden R, Di Nunzio GM, Roller R, Thomas P, Grozea C, Perez-de-Viñaspre O, Vicente Navarro M and Jimeno Yepes A. Findings of the WMT 2021 Biomedical Translation Shared Task: Summaries of Animal Experiments as New Test Set, 6th Conference on Machine Translation, EMNLP 2021. [PDF and Bibtex]
  • Accuosto P, Neves M and Saggion H. Argumentation mining in scientific literature: From computational linguistics to biomedicine, Proccedings of the 11th International Workshop on Bibliometric-enhanced Information Retrieval (BIR), pages 20-36, ECIR 2021, online. [PDF] [proceedings] [workshop] [Bibtex]

    • 2020

  • Bawden R, Di Nunzio GM, Grozea C, Jauregi Unanue I, Jimeno Yepes A, Mah N, Martinez D, Neveol A, Neves M, Oronoz M, Perez de Viñaspre O, Piccardi M, Roller R, Siu A, Thomas P, Vezzani F, Vicente Navarro M, Wiemann D, Yeganova L. Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages, 5th Conference on Machine Translation, EMNLP 2020, online. [PDF and Bibtex]
  • Neves M, Ševa J. Annotationsaurus: A Searchable Directory of Annotation Tools, Preprint in arXiv. [PDF]
  • Neves M. Integration of the PubAnnotation ecosystem in the development of a web-based search tool for alternative methods, Genomics & Informatics, 2020, 18(2). [Full Text] [PDF]
  • Neveol A, Jimeno Yepes A, Neves M. MEDLINE as a Parallel Corpus: a Survey to Gain Insight on French-, Spanish-and Portuguese-Speaking Authors’ Abstract Writing Practice, 12th Language Resources and Evaluation Conference, LREC 2020, Marseille, France. [Full Text, PDF]
  • Butzke D, Dulisch N, Dunst S, Steinfath M, Neves M, Mathiak B, Grune B. SMAFIRA-c: A benchmark text corpus for evaluation of approaches to relevance ranking and knowledge discovery in the biomedical domain, Preprint from Research Square. [Full Text, PDF]

    • 2019

  • Neves M, Ševa J. An extensive review of tools for manual annotation of documents, Briefings in Bioinformatics. [Full Text, PDF, and BibTex]
  • Bawden R, Bretonnel Cohen K, Grozea C, Jimeno Yepes A, Kittner M, Krallinger M, Mah N, Neveol A, Neves M, Soares F, Siu A, Verspoor A, Vicente Navarro M. Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies , 4th Conference on Machine Translation, ACL 2019, Florence, Italy. [PDF and Bibtex]
  • Neves M, Butzke D, Grune B. Evaluation of Scientific Elements for Text Similarity in Biomedical Publications, 6th Workshop on Argument Mining, ACL 2019, Florence, Italy. [PDF and Bibtex]
  • Neves M, Butzke D, Dörendahl A, Leich N, Hummel B, Schönfelder G, Grune B. Overview of the CLEF eHealth 2019 Multilingual Information Extraction, Tenth International Conference of the CLEF Association (CLEF 2019), Lugano, Switzerland. [PDF]
  • Kelly L, Suominen H, Goeuriot L, Neves M, Kanoulas E, Li D, Azzopardi L, Spijker R. Overview of the CLEF eHealth Evaluation Lab 2019, International Conference of the CLEF Association, CLEF 2019, 2019, Lugano, Switzerland. [PDF]
  • Kelly L, Goeuriot L, Suominen H, Neves M, Kanoulas E, Spijker R, Azzopardi L, Li D, Jimmy, Palotti J, Zuccon G. CLEF eHealth 2019 Evaluation Lab, 41st European Conference on Information Retrieval, 2019, Cologne, Germany. [PDF and Bibtex]

    • 2018

  • Neves M, Jimeno Yepes A, Névéol A, Grozea C, Siu A, Kittner M, Verspoor K. Findings of the WMT 2018 Biomedical Translation Shared Task: Evaluation on Medline test sets, Proceedings of the Third Conference on Machine Trasnlation (WMT) at EMNLP, 2018, Brussels, Belgium. [pdf] [Bibtex]
  • Eckert F and Neves M. Semantic role labeling tools for biomedical question answering: a study of selected tools on the BioASQ datasets, Proceedings of the 6th BioASQ Workshop at EMNLP, 2018, Brussels, Belgium. [pdf and bibtex]
  • Neves M, Butzke D, Schönfelder G, Grune B. Bf3R at SemEval-2018 Task 7: Evaluating Two Relation Extraction Tools for Finding Semantic Relations in Biomedical Abstracts, Proceedings of the 12th International Workshop on Semantic Evaluation, 2018, New Orleans, EUA. [pdf and bibtex] [overview paper SemEval'18 Task 7]
  • Névéol A, Jimeno Yepes A, Neves M, Verspoor K. Parallel Corpora for the Biomedical Domain, International Conference on Language Resources and Evaluation (LREC), 2018, Myazaki, Japan. [pdf and bibtex]
  • Moussallem D, Ferreira T, Zampieri M, Cavalcanti M C, Xexéo G, Neves M and Ngonga Ngomo A-C. RDF2PT: Generating Brazilian Portuguese Texts from RDF Data, International Conference on Language Resources and Evaluation (LREC), 2018, Myazaki, Japan. [pdf and bibtex]

    • 2017

  • Jimeno Yepes A, Névéol A, Neves M, Verspoor K, Bojar O, Boyer A, Grozea C, Haddow H, Kittner M, Lichtblau Y, Pecina P, Roller R, Rosa R, Siu A, Thomas P, Trescher S. Findings of the WMT 2017 Biomedical Translation Shared Task, Proceedings of the Second Conference on Machine Translation (WMT17) at the Conference on Empirical Methods on Natural Language Processing (EMNLP 2017), Copenhagen, Denmark. [conference] [challenge] [BibTex] [PDF]
  • Wiese G, Weissenborn D and Neves M. Neural Domain Adaptation for Biomedical Question Answering, SIGNLL Conference on Computational Natural Language Learning (CoNLL) at ACL'17, Vancouver, Canada. [conference] [arXiv] [BibTex] [PDF]
  • Wiese G, Weissenborn D and Neves M. Neural Question Answering at BioASQ 5B, Biomedical Natural Language Processing (BioNLP) Workshop at ACL'17, Vancouver, Canada. [workshop] [arXiv] [BibTex] [PDF]
  • Neves M, Eckert F, Folkerts H and Uflacker M. Assessing the performance of Olelo, a real-time biomedical question answering application, Biomedical Natural Language Processing (BioNLP) Workshop at ACL'17, Vancouver, Canada. [workshop] [BibTex] [PDF]
  • Neves M. A parallel collection of clinical trials in Portuguese and English, 10th Workshop on Building and Using Comparable Corpora (BUCC) at ACL'17, Vancouver, Canada. [workshop] [BibTex] [PDF] [corpus]
  • Neves M, Folkerts H, Jankrift M, Niedermeier J, Stachewicz T, Tietböhl S, Kraus M and Uflacker M. Olelo: A Question Answering Application for Biomedicine, ACL Demo 2017, Vancouver, Canada. [conference] [BibTex] [PDF] [Web application]
  • Habibi M, Weber L, Neves M, Wiegandt D L and Leser U. Deep Learning with Word Embeddings improves Biomedical Named Entity Recognition, ISMB/ECCB 2017, Prague, Czech Republic. Proceedings published in Bioinformatics, volume 33, issue 14. [conference] [full text]
  • Kraus M, Niedermeier J, Jankrift M, Tietböhl S, Stachewicz T, Folkerts H, Uflacker M and Neves M. Olelo: a web application for intuitive exploration of biomedical literature, Nucleic Acids Research Web service issue. [full text]
  • Folkerts H and Neves M. Olelo’s named-entity recognition web service in the BeCalm TIPS task, BeCalm Workshop, Barcelona, Spain. [workshop] [proceedings] [PDF]
  • Nentidis A, Yang Z, Neves M, Kim J-D, Krithara A, Paliouras G and Kakadiaris I. BioASQ and PubAnnotation: Using linked annotations in biomedical question answering, BLAH3 workshop, 2017, Tokyo, Japan. [workshop] [pdf]

    • 2016

  • Neves M and Kraus M. BioMedLAT Corpus: Annotation of the Lexical Answer Type for Biomedical Questions, Proceedings of the Open Knowledge Base and Question Answering Workshop at Coling 2016, pp. 49-58, Osaka, Japan. [workshop] [pdf] [Bibtex]
  • Schulze F and Neves M. Entity-Supported Summarization of Biomedical Abstracts, Fifth Workshop on Building and Evaluating Resources for Biomedical Text Mining, Coling 2016, Osaka, Japan. [workshop] [pdf] [Bibtex]
  • Neves M, Rey M and Wittig U. Text Mining to Support Data Curation for SABIO-RK, BLAHmuc workshop, 2016, Munich, Germany. [workshop] [pdf]
  • Cohen K B, Demner-Fushman D, Fort K, Grouin C, Hunter L E, U. Leser U, Neveol A, Neves M and Zweigenbaum P. Towards the Last Annotation Tool, BLAHmuc workshop, 2016, Munich, Germany. [workshop] [pdf]
  • Bojar O, Chatterjee R, Federmann C, Graham Y, Haddow B, Huck M, Jimeno Yepes A, Koehn P, Logacheva V, Monz C, Negri M, Névéol A, Neves M, Popel M, Post M, Rubino R, Scarton C, Specia L, Turchi M, Verspoor K and Zampieri M. Findings of the 2016 Conference on Machine Translation, ACL 2016, Proceedings of the First Conference on Machine Translation (WMT16), pp. 131-198, 2016, Berlin, Germany. [workshop] [pdf] [Bibtex]
  • Grundke M, Jasper J, Perchyk M, Sachse J P, Krestel R, Neves M. TextAI: Enhancing TextAE with Intelligent Annotation Support, Proceedings of the Seventh International Symposium on Semantc Mining for Biomedicine (SMBM), pp. 80-84, 2016, Potsdam, Germany. [symposium] [pdf]
  • Schulze F, Schüler R, Draeger T, Dummer D, Ernst A, Flemming P, Perscheid C, Neves M. HPI Question Answering System in BioASQ 2016, Proceedings of the Fourth BioASQ workshop, pp 38--44, ACL 2016, Berlin, Germany. [symposium] [pdf]
  • Neves M, Jimeno-Yepes A and Névéol A. The Scielo Corpus: a Parallel Corpus of Scientific Publications for Biomedicine, International Conference on Language Resources and Evaluation (LREC), 2016, Portoroz, Slovenia. [pdf and bibtex]

    • 2015

  • Neves M and Leser U. Question Answering for Biology, Methods, 2015. [full text]
  • Neves M. HPI Question Answering System in the BioASQ 2015 Challenge, Working Notes for the CLEF BioASQ Challenge, 2015,Toulouse, France. [workshop] [pdf]

    • 2014

  • Comeau DC, Batista-Navarro RT, Dai H-J, Islamaj Doğan R, Jimeno Yepes A, Khare R, Lu Z, Marques H, Mattingly C J, Neves M, Peng Y, Rak R, Rinaldi F, Tzong-Han Tsai R, Verspoor K, Wiegers T C, Wu C H, Wilbur W J. BioC Interoperability Track Overview, Database, 2014. [full text] [PubMed]
  • Neves M. An analysis on the entity annotations in biological corpora, F1000, 2014. [full text] [PubMed]
  • Stachelscheid H, Seltmann S, Lekschas F, Fontaine J-F, Mah N, Neves M, Andrade-Navarro M, Leser U, Kurtz A. CellFinder: a cell data repository, Nucleic Acids Research, 2014. [PubMed] [full text] [BibTex]
  • Neves M. HPI in-memory-based database system in Task 2b of BioASQ, Working Notes for the CLEF BioASQ Challenge, 2014, Sheffield, UK. [workshop] [pdf]
  • Herbst K, Fähnrich C, Neves M, Schapranow, M-P. Applying In-Memory Technology for Automatic Template Filling in the Clinical Domain, Working Notes for the CLEF eHealth Challenge, 2014, Sheffield, UK. [workshop] [pdf]
  • Neves M, Herbst K, Uflacker M, Plattner H. Preliminary evaluation of passage retrieval in biomedical multilingual question answering, BioTxtM 2014, Fourth Workshop on Building and Evaluating Resources for Health and Biomedical Text Processing, 2014, Reykjavik, Iceland. [pdf] [workshop]
  • Bokharaeian B, Diaz A, Neves M, Francisco V. Exploring negation annotations in the DrugDDI Corpus, BioTxtM 2014, Fourth Workshop on Building and Evaluating Resources for Health and Biomedical Text Processing, 2014, Reykjavik, Iceland. [pdf] [workshop]

    • 2013

  • Neves M, Damaschun A, Mah N, Lekschas F, Seltmann S, Stachelscheid H, Fontaine J-F, Kurtz A and Leser U. Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts, Database, BioCuration special issue, 2013. [PubMed] [full text]
  • Neves M, Braun J, Diehl A, Hayman G T, Wang S-J, Leser U, Kurtz A. Evaluation of the CellFinder pipeline in the BioCreative IV User Interactive task, BioCreative IV workshop - Track 5 Interactive Task (IAT), 2013, Bethesda, USA. [pdf] [workshop] [BibTex]
  • Jimeno Yepes A, Neves M, Verspoor K. Brat2BioC: conversion tool between brat and BioC, BioCreative IV workshop - Track 1 BioC Interoperabiliy, 2013, Bethesda, USA. [pdf] [workshop] [BibTex]
  • Thomas P, Neves M, Rocktäschel T, Leser U. WBI-DDI: Drug-Drug Interaction Extraction using Majority Voting, Second Drug-Drug Interaction Challenge (DDI) at Semeval., 2013, Atlanta, USA. [pdf] [workshop] [BibTex]

    • 2012

  • Neves M and Leser U. A Survey on Annotation Tools for the Biomedical Literature, Briefings in Bioinformatics, 2012. [PubMed] [full text] [Supplementary material]
  • Neves M, Damaschun A, Kurtz A, Leser U. Annotating and evaluating text for stem cell research, Third Workshop on Building and Evaluating Resources for Biomedical Text Mining, Language Resources and Evaluation (LREC), 2012, Istanbul, Turkey. [pdf] [workshop] [BibTex]

    • 2011

  • Kano Y, Björne J, Ginter F, Buyko E, Hahn U, Cohen K B, Verspoor K, Roedor C, Hunter L E, Kilicoglu H, Bergler S, Van Landeghem S, Van Parys T, Van de Peer Y, Miwa M, Ananiadou S, Neves M, Pascual-Montano A, Özgür A, Radev D R, Riedel S, Sætre R, Chun H-W, Kim J-D, Pyysalo S, Ohta T, and Tsujii J. U-Compare Bio-Event Meta-Service: Compatible BioNLP Event Extraction Services, BMC Bioinformatics, 12:481, 2011. [PubMed] [full text] [BibTex]
  • Rebholz-Schuhmann D, Jimeno A, Li Ch, Kafkas S, Lewin I, Kang N, Corbett P, Milward D, Buyko E, Beisswanger E, Hornbostel K, Kouznetsov A, Witte R, Laurila J B, Baker Ch JO, Kuo Ch, Clematide S, Rinaldi F, Farkas R, Móra G, Hara K, Furlong L, Rautschka K, Neves M L, Pascual-Montano A, Wei Q, Collier N, Mahbub Chowdhury F, Lavelli A, Berlanga R, Morante R, Van Asch V, Daelemans W, Marina J L, van Mulligen E, Kors J and Hahn U. Assessment of NER solutions against the first and second CALBC Silver Standard Corpus, SMBM 2010 special issue in the Journal of Biomedical Semantics, 2(Suppl 5):S11, 2011. [PubMed] [full text] [BibTex]
  • Thomas P, Neves M, Solt I, Tikk D, Leser U. Relation Extraction for Drug-Drug Interactions using Ensemble Learning, DDIExtraction2011: First Challenge Task: Drug-Drug Interaction Extraction, September 7th, 2011, Huelva, Spain. [pdf] [workshop] [BibTex]

    • 2010

  • Neves M L, Carazo J M and Pascual-Montano A. Moara: a Java library for extracting and normalizing gene and protein mentions, BMC Bioinformatics, 2010, 11:157. [PubMed] [full text] [BibTex]
  • Neves M, Carazo J M and Pascual-Montano A. Extracting and normalizing gene/protein mentions with the flexible and trainable Moara Java library, BioLINK Special Interest Group, ISBM/ECCB 2009, Lecture Notes on Bioinformatics: Linking, Literature, Information, and Knowledge for Biology, 6004, pp. 71-80. Springer, Heidelberg, 2010. [Springer website] [BibTex]
  • Rebholz-Schuhmann D, Jimeno A, Li Ch, Kafkas S, Lewin I, Kang N, Corbett P, Milward D, Buyko E, Beisswanger E, Hornbostel K, Kouznetsov A, Witte R, Laurila J B, Baker Ch JO, Kuo Ch, Clematide S, Rinaldi F, Farkas R, Móra G, Hara K, Furlong L, Rautschka K, Neves M L, Pascual-Montano A, Wei Q, Collier N, Mahbub Chowdhury F, Lavelli A, Berlanga R, Morante R, Van Asch V, Daelemans W, Marina J L, van Mulligen E, Kors J and Hahn U. Assessment of NER solutions against the first and second CALBC Silver Standard Corpus, Proceedings of the 4th International Symposium on Semantic Mining in Biomedicine (SMBM'10), pages 66-74, 25th-26th October 2010, European Bioinformatics Institute, Hinxton, Cambridgeshire, United Kingdom. [symposium]
  • Neves M, Marina J L and Pascual-Montano A. BioLabeler and Moara in the First Round of the CALBC challenge, Proceedings of the First CALBC Workshop, June 17th-18th 2010, European Bioinformatics Institute, Hinxton, Cambridgeshire, United Kindom. [pdf] [workshop]

    • 2009

  • Neves M, Carazo J M and Pascual-Montano A. Moara project: a flexible and trainable Java library for the gene/protein recognition and normalization tasks, Proceedings of the ISMB BioLINK'09, pp. 241-244, June 28th 2009, Stockholm, Sweden. [pdf] [workshop]
  • Neves M, Carazo J M and Pascual-Montano A. Extraction of biomedical events using case-based reasoning, Proceedings of the BioNLP'09 Shared Task on Event Extraction Workshop at NAACL-HLT 2009, pp. 68-76, June 5th 2009, Boulder, CO, USA. [pdf] [workshop]

    • 2008

  • Smith L, Tanabe L K, Ando R J, Kuo C-J, Chung I-F, Hsu C-N, Lin Y-S, Klinger R, Friedrich C M, Ganchev K, Torii M, Liu H, Haddow B, Strubble C A, Povinelli R J, Vlachos A, Baumgartner W A, Hunter L, Carpenter B, Tsai R, Dai H-J, Liu F, Chen Y, Sun C, Katrenko S, Adriaans P, Blaschke C, Torres Perez R, Neves M, Nakov P, Divoli A, Mana M, Mata-Vazquez J and Wilbur W J. Overview of BioCreative II Gene Mention Recognition, Genome Biology, 2008, 9(Suppl 2):S2 (1 September 2008). [PubMed] [full text] [BibTex]
  • Neves M, Carazo J M and Pascual-Montano A. Botero: a SVM classifier for clinical text in the obesity domain, Proceedings of the Second i2b2 Workshop on Challenges in Natural Language Processing for Clinical Data, Nov 7-8, 2008, Washington, DC, USA. [pdf] [workshop]
  • Neves M, Chagoyen M, Carazo J M and Pascual-Montano A. CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem, Proceedings of the BioNLP 2008 Workshop at ACL 2008, pp. 108-109, June 2008, Columbus, OH, USA. [pdf] [workshop]
  • Neves M, Chagoyen M, Carazo J M and Pascual-Montano A. A new methodology for gene normalization using a mix of taggers, global alignment matching and document similarity disambiguation, VIII Jornadas de Bioinformatica, Valencia, Spain, 2008. [pdf] [conference]

    • 2007

  • Diaz-Uriarte R, Alibes A, Morrissey E, Canada A, Rueda O, Neves M. Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite, Nucleic Acids Research Advance Access, May 8th, 2007. [PubMed] [full text] [BibTex]
  • Neves M L. Identifying Gene Mentions by Case-Based Classification, Proceedings of the Second BioCreative Challenge Evaluation Workshop, pp. 77-79, Madrid, Spain, 2007. [pdf] [workshop]

    • 2001

  • Neves M L & Barros F A. CitationFinder: A Knowledge-Based System for Web Pages of Citations Classification, Natural Language Processing and Knowledge Engineering (NLPKE) Mini Symposium do IEEE International Conference on Systems, Man, and Cybernetics (SMC2001), Tucson, Arizona, EUA, pp. 441-446, 2001. [pdf]
  • Neves M L & Barros F A. CitationFinder: Um Sistema Baseado em Conhecimento para Classificacao de Paginas de Publicacoes na Web, ENIA2001, Encontro Nacional de Inteligencia Artificial do XXI Congresso da Sociedade Brasileira de Computacao, Fortaleza, Brazil, pp. 1145-1154, 2001. [pdf] (in Portuguese)

    • Abstracts in Conferences and Workshops

  • Neves M, Uflacker M. Preliminary evaluation of question answering to support biological curation, Poster in the BioCuration Conference (ISB2014), 2014, Toronto, Canada. [conference] [poster in F1000]
  • Huber T, Neves M, Rocktäschel T, Thomas P, Weidlich M, Leser U. WBI resources and participation in BioCreative IV, Poster in the BioCreative IV workshop, 2013, Bethesda, USA. [workshop]
  • Neves M, Damaschun A, Mah N, Lekschas F, Seltmann S, Stachelscheid H, Fontaine J-F, Kurtz A, Leser U. Text mining for characterizing cells and tissues, Poster in the BioLINK at ISMB, 2013, Berlin, Germany. [workshop]
  • Neves M and Leser U. Tools for Annotating Biomedical Texts, Poster in the Fifth International Biocuration Conference, 2012, Washington, USA. [conference]
  • Neves M, Solt I, Leser U. A Repository of Annotated Biomedical Corpora using Stav Visualization, Poster in the Fifth International Biocuration Conference, 2012, Washington, USA. [conference]
  • Stachelscheid H, Damaschun A, Lekschas F, Werner S, Neves M, Leser U, Nguyen-Dobinsky TN, Kurtz A. CellFinder: A New Stem Cell and Developmental Biology platform and data repository, 4th Bioinformatics Stem Cells Satellite Workshop, Stem Cell Network NRW - 6th International Meeting, April 7th, 2011, Essen, Germany. [workshop]
  • Carmona-Saez P, Nogales-Cadenas R, Vazquez M, Mejía E, Abascal F, Neves M, Tirado F, Carazo J-M, Pascual-Montano A. Data Analysis Tools at the UCM-CNB Bioinfo Unit, 7th Asia Pacific Bioinformatics Conference, 2009, Beijing, China. [workshop]

    • Thesis

  • Minería de Texto aplicada a Bioinformática Funcional, 2012, PhD thesis (in English with long summary in Spanish), Facultad de Informática, Universidad Complutense de Madrid, Spain. [pdf] Advisor: Alberto Pascual Montano Reviewers: Francisco Tirado (Universidad Complutense de Madrid), Alberto Diaz (Universidad Complutense de Madrid), Christian Blaschke (Centro Nacional de Investigaciones Oncologicas - CNIO), Paloma Martínez Fernández (Universidad Carlos III de Madrid), Manuel Maña (Universidad de Huelva)
  • CitationFinder - Um Sistema de Meta-busca e Classificação de Páginas de Publicações na Web, 2001, Master thesis (in Portuguese), Universidade Federal de Pernambuco, Brazil. Advisor: Flavia de Almeida Barros